Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
FAIRE-seq
Assay category
172
DNA binding
35
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
12
February, 2020
7
October, 2017
2
March, 2020
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
236
Homo sapiens
Biosample type
216
tissue
20
primary cell
Organ
633
liver
628
pancreas
572
connective tissue
426
adipose tissue
316
heart
310
epithelium
236
brain
164
vasculature
159
blood vessel
143
kidney
93
limb
89
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
32
nerve
29
embryo
18
ureter
15
spleen
15
vein
11
eye
2
intestine
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
236
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
236
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
bed bedMethyl
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
236 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download