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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
48
ATAC-seq
27
ChIP-seq
1
pCHi-C
Assay category
188
Transcription
48
DNA accessibility
27
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
Date released
565
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
261
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
August, 2021
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
50
March, 2020
49
April, 2018
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
25
February, 2020
20
May, 2022
19
February, 2023
14
October, 2017
9
December, 2019
8
January, 2018
7
August, 2020
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
Available data
283
bam
263
bigWig
189
tsv
50
tagAlign
41
fastq
27
bed narrowPeak
19
zippedFastqFolder
Organism
264
Homo sapiens
Biosample type
170
tissue
93
primary cell
1
cell line
Organ
171
liver
3
epithelium
3
pancreas
Project
216
AMP
45
T1D
3
HPAP
Genome assembly (visualization)
260
hg19
210
GRCh38
Lab
216
AMP-T2D consortium
45
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
264 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
27
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 22 more…
cell line
HepG2
1
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