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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
19
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
1
pCHi-C
Assay category
400
Transcription
19
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
428
Homo sapiens
Biosample type
426
tissue
2
primary cell
Organ
634
liver
632
pancreas
574
connective tissue
428
adipose tissue
322
heart
epithelium
236
brain
165
vasculature
160
blood vessel
143
kidney
94
limb
89
artery
71
musculature of body
58
bone element
55
blood
55
bodily fluid
32
nerve
29
embryo
18
ureter
17
spleen
15
vein
11
eye
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
428
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
epithelium
mammary gland
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
adipose tissue
381
1
2
2
1
omental fat pad
5
3
1
1
2
white adipose tissue
12
subcutaneous adipose tissue
7
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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