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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1142total RNA-seq
  • 1093ChIP-seq
  • 205DNase-seq
  • 118ATAC-seq
  • 79single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1239Transcription
  • 1093DNA binding
  • 328DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 800histone modification
  • 799histone
  • 409narrow histone mark
  • 389broad histone mark
  • 271transcription factor
  • 82RNA binding protein
  • 27chromatin remodeller
  • 22control
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 203November, 2017
  • 139July, 2018
  • 130August, 2017
  • 97May, 2019
  • 85July, 2019
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 45December, 2017
  • 42October, 2018
  • 40May, 2024
  • 35November, 2018
  • 31November, 2019
  • 27December, 2018
  • 20March, 2020
  • 20May, 2022
  • 17February, 2018
  • 17January, 2019
  • 8January, 2018
  • 7August, 2020
  • 7October, 2017
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3February, 2023
  • 3September, 2020
  • 2August, 2018
  • 2June, 2018
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2686Homo sapiens
Biosample type
  • 1600tissue
  • 498primary cell
  • 343cell line
  • 243in vitro differentiated cells
  • 3stem cell
Organ
  • 551connective tissue
  • 416liver
  • 410adipose tissue
  • 407pancreas
  • 224heart
  • 223epithelium
  • 218brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 43blood
  • 43bodily fluid
  • 31nerve
  • 25embryo
  • 18ureter
  • 15vein
  • 13spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2491AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2537hg19
  • 2454GRCh38
  • 5hg18
Lab
  • 2378AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 185inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 24missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2687 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue38122
liver147441201
islet of Langerhans171231261
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell71011
pancreatic beta cell7610
skeletal muscle myoblast1141
cell line
HepG21641
smooth muscle cell of the coronary artery524
EndoC_BH133132
GM12878421
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4463
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
hepatocyte14
stem cell
hESC21
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