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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 1276ChIP-seq
  • 207DNase-seq
  • 135ATAC-seq
  • 72single cell RNA-seq
  • 18small RNA-seq
  • 13WGBS
  • 5FAIRE-seq
  • 5Hi-C
Assay category
  • 1368Transcription
  • 1276DNA binding
  • 347DNA accessibility
  • 13DNA methylation
  • 53D chromatin structure
Target of assay
  • 813histone modification
  • 812histone
  • 439transcription factor
  • 414narrow histone mark
  • 397broad histone mark
  • 88recombinant protein
  • 72RNA binding protein
  • 23control
  • 16chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 316November, 2017
  • 303May, 2021
  • 263August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 153July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72September, 2018
  • 65April, 2019
  • 58November, 2018
  • 47August, 2021
  • 40May, 2024
  • 31December, 2017
  • 31February, 2018
  • 31November, 2019
  • 30October, 2018
  • 28April, 2018
  • 28December, 2018
  • 20March, 2020
  • 20May, 2022
  • 15January, 2019
  • 13October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3February, 2023
  • 3January, 2018
  • 3September, 2020
  • 2August, 2018
  • 2June, 2018
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1566tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 256bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3003Homo sapiens
Biosample type
  • 1735tissue
  • 579primary cell
  • 479cell line
  • 216in vitro differentiated cells
Organ
  • 577pancreas
  • 567liver
  • 563connective tissue
  • 423adipose tissue
  • 259epithelium
  • 224heart
  • 220brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 46blood
  • 46bodily fluid
  • 31nerve
  • 20embryo
  • 18ureter
  • 15vein
  • 10spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2813AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2867hg19
  • 2777GRCh38
Lab
  • 2699AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 190inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

3009 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
Hi-C
tissue
adipose tissue38112
islet of Langerhans260281361
liver147811201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell107136
pancreatic beta cell107106
pancreatic acinar cell48511
cell line
HepG252921
smooth muscle cell of the coronary artery524
EndoC_BH133132
GM12878451
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte44213
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
embryonic stem cell226
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