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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1331ChIP-seq
  • 1278total RNA-seq
  • 203DNase-seq
  • 131ATAC-seq
  • 105single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1401Transcription
  • 1331DNA binding
  • 339DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 440narrow histone mark
  • 440transcription factor
  • 427broad histone mark
  • 94RNA binding protein
  • 88recombinant protein
  • 35chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 325November, 2017
  • 303May, 2021
  • 270August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 163July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72September, 2018
  • 70December, 2017
  • 67November, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 40May, 2024
  • 37October, 2018
  • 31February, 2018
  • 31November, 2019
  • 20January, 2019
  • 20March, 2020
  • 20May, 2022
  • 11October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2018
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3279bam
  • 3098bigWig
  • 1729bed narrowPeak
  • 1599tsv
  • 1206fastq
  • 975bigBed narrowPeak
  • 398tagAlign
  • 316bed broadPeak
  • 279bigBed broadPeak
  • 267bed bed3+
  • 155txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3092Homo sapiens
Biosample type
  • 1746tissue
  • 612primary cell
  • 478cell line
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 612pancreas
  • 607liver
  • 564connective tissue
  • 419adipose tissue
  • 300epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 29embryo
  • 21blood
  • 21bodily fluid
  • 18ureter
  • 15vein
  • 11spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2902AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2945hg19
  • 2859GRCh38
  • 5hg18
Lab
  • 2788AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

3098 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue138122
islet of Langerhans292601361
liver821471201
bone tissue58
left cardiac atrium401
primary cell
monocyte84532
pancreatic alpha cell7101311
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7101012
pancreatic ductal cell134410
cell line
HepG231651
smooth muscle cell of the coronary artery452
EndoC_BH113332
GM12878201
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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