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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
9
total RNA-seq
1
DNase-seq
Assay category
103
DNA binding
9
Transcription
1
DNA accessibility
Target of assay
51
transcription factor
47
histone
47
histone modification
24
broad histone mark
23
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
5
control
1
other context
1
other post-translational modification
Date released
57
November, 2017
27
August, 2017
25
February, 2018
2
December, 2017
2
November, 2018
Available data
142
fastq
137
bam
113
bigWig
94
bed narrowPeak
64
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
16
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
Organism
113
Homo sapiens
Biosample type
59
cell line
25
in vitro differentiated cells
24
primary cell
5
tissue
Organ
61
liver
17
pancreas
14
epithelium
9
embryo
Project
113
AMP
Genome assembly (visualization)
113
hg19
97
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
14
inconsistent control read length
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
total RNA-seq
DNase-seq
cell line
HepG2
59
in vitro differentiated cells
pancreatic endoderm
6
3
endocrine cell
2
2
definitive endodermal cell
2
1
embryonic stem cell
2
1
posterior foregut
2
1
+ See 1 more…
primary cell
skeletal muscle myoblast
9
1
pancreatic alpha cell
7
pancreatic beta cell
7
tissue
islet of Langerhans
3
liver
2
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