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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
  • 34single cell RNA-seq
  • 5GRO-seq
  • 4WGBS
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 114DNA binding
  • 34Transcription
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 57transcription factor
  • 56histone
  • 56histone modification
  • 34RNA binding protein
  • 30broad histone mark
  • 26narrow histone mark
  • 20chromatin remodeller
Date released
  • 41December, 2017
  • 22November, 2018
  • 21April, 2018
  • 18November, 2017
  • 17October, 2018
  • 11January, 2019
  • 11July, 2018
  • 9August, 2017
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1October, 2017
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 160Homo sapiens
Biosample type
  • 43cell line
  • 43in vitro differentiated cells
  • 37tissue
  • 34primary cell
  • 3stem cell
Organ
  • 55liver
  • 46pancreas
  • 42epithelium
  • 9blood
  • 9bodily fluid
  • 9embryo
  • 7connective tissue
  • 6spleen
  • 2adipose tissue
  • 2brain
Project
  • 160AMP
Genome assembly (visualization)
  • 153GRCh38
  • 149hg19
  • 5hg18
Lab
  • 160AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

160 results

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Clear Filters
ChIP-seq
single cell RNA-seq
GRO-seq
WGBS
DNase-seq
ATAC-seq
cell line
HepG234
GM128789
in vitro differentiated cells
hepatocyte14
pancreatic endoderm61
Posterior foregut41
adipocyte5
definitive endodermal cell41
tissue
body of pancreas17
spleen6
right lobe of liver5
adipose tissue2
liver11
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
mesenchymal cell4
stem cell
hESC21
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