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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1283ChIP-seq
  • 1263total RNA-seq
  • 209DNase-seq
  • 128ATAC-seq
  • 80single cell RNA-seq
  • 18small RNA-seq
  • 14WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1361Transcription
  • 1283DNA binding
  • 342DNA accessibility
  • 14DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 440narrow histone mark
  • 427broad histone mark
  • 392transcription factor
  • 88RNA binding protein
  • 88recombinant protein
  • 33chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 299November, 2017
  • 261August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 156July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72September, 2018
  • 70December, 2017
  • 65April, 2019
  • 65November, 2018
  • 47August, 2021
  • 40May, 2024
  • 34October, 2018
  • 32April, 2018
  • 31November, 2019
  • 20March, 2020
  • 20May, 2022
  • 18January, 2019
  • 16February, 2018
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3September, 2020
  • 2December, 2018
  • 2June, 2018
Available data
  • 3183bam
  • 3010bigWig
  • 1691bed narrowPeak
  • 1553tsv
  • 1125fastq
  • 940bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 155txt
  • 151zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3004Homo sapiens
Biosample type
  • 1736tissue
  • 587primary cell
  • 440cell line
  • 244in vitro differentiated cells
  • 3stem cell
Organ
  • 592pancreas
  • 580liver
  • 554connective tissue
  • 409adipose tissue
  • 283epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 25embryo
  • 18ureter
  • 15vein
  • 12blood
  • 12bodily fluid
  • 12spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2814AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2860hg19
  • 2771GRCh38
  • 5hg18
Lab
  • 2700AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

3010 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue13812
islet of Langerhans292601361
liver821472201
bone tissue58
left cardiac atrium401
primary cell
monocyte84532
CD8-positive, alpha-beta T cell3342
pancreatic alpha cell710138
pancreatic beta cell710108
pancreatic acinar cell84511
cell line
HepG228751
smooth muscle cell of the coronary artery452
EndoC_BH113332
GM12878111
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
hepatocyte14
stem cell
hESC21
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