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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1300ChIP-seq
  • 1273total RNA-seq
  • 209DNase-seq
  • 127ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5Hi-C
  • 4FAIRE-seq
Assay category
  • 1397Transcription
  • 1300DNA binding
  • 340DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 854histone modification
  • 853histone
  • 437narrow histone mark
  • 422transcription factor
  • 415broad histone mark
  • 105RNA binding protein
  • 76recombinant protein
  • 33chromatin remodeller
  • 22control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 303November, 2017
  • 260May, 2020
  • 254August, 2017
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 75November, 2018
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 34December, 2017
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 20March, 2020
  • 20May, 2022
  • 19January, 2019
  • 13October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3February, 2023
  • 3January, 2018
  • 3June, 2018
  • 3September, 2020
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1595tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 262bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3053Homo sapiens
Biosample type
  • 1727tissue
  • 605primary cell
  • 484cell line
  • 243in vitro differentiated cells
Organ
  • 609pancreas
  • 565connective tissue
  • 550liver
  • 423adipose tissue
  • 293epithelium
  • 224heart
  • 221brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 53blood
  • 53bodily fluid
  • 31nerve
  • 25embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2863AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2912hg19
  • 2831GRCh38
Lab
  • 2749AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 84missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

3059 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
FAIRE-seq
tissue
adipose tissue138122
islet of Langerhans282601361
liver461472201
bone tissue58
left cardiac atrium401
primary cell
monocyte84532
CD8-positive, alpha-beta T cell3342
pancreatic alpha cell7101012
pancreatic beta cell710712
pancreatic ductal cell134410
cell line
HepG22951
smooth muscle cell of the coronary artery452
GM12878521
EndoC_BH113332
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte44413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
hepatocyte14
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