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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 1220ChIP-seq
  • 209DNase-seq
  • 126ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 1220DNA binding
  • 340DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 803histone modification
  • 802histone
  • 411narrow histone mark
  • 392transcription factor
  • 390broad histone mark
  • 94RNA binding protein
  • 25chromatin remodeller
  • 23control
  • 19recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 265November, 2017
  • 260May, 2020
  • 241August, 2017
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72September, 2018
  • 65April, 2019
  • 59November, 2018
  • 53December, 2017
  • 49April, 2018
  • 47August, 2021
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30October, 2018
  • 28December, 2018
  • 20March, 2020
  • 20May, 2022
  • 15January, 2019
  • 14October, 2017
  • 8January, 2018
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
Available data
  • 3199bam
  • 2989bigWig
  • 1647bed narrowPeak
  • 1600tsv
  • 1155fastq
  • 902bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2983Homo sapiens
Biosample type
  • 1741tissue
  • 602primary cell
  • 428cell line
  • 215in vitro differentiated cells
  • 3stem cell
Organ
  • 596pancreas
  • 540connective tissue
  • 518liver
  • 425adipose tissue
  • 277epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 46blood
  • 46bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 15vein
  • 7spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2803AMP
  • 186T1D
Genome assembly (visualization)
  • 2849hg19
  • 2750GRCh38
  • 5hg18
Lab
  • 2689AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 85missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 8inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

2989 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260291361
liver147822201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
cell line
HepG252411
smooth muscle cell of the coronary artery524
EndoC_BH133132
GM12878451
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte41713
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
stem cell
hESC21
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