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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
26
single cell RNA-seq
15
total RNA-seq
8
ATAC-seq
3
WGBS
Assay category
107
DNA binding
41
Transcription
8
DNA accessibility
3
DNA methylation
Target of assay
104
transcription factor
18
RNA binding protein
3
chromatin remodeller
Date released
35
November, 2017
28
December, 2018
17
April, 2018
15
February, 2018
15
November, 2018
13
October, 2018
11
August, 2017
8
January, 2019
8
July, 2018
6
October, 2017
2
December, 2017
1
June, 2018
Available data
233
fastq
209
bam
159
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
159
Homo sapiens
Biosample type
82
cell line
36
tissue
26
primary cell
15
in vitro differentiated cells
Organ
43
blood
43
bodily fluid
42
liver
31
pancreas
18
epithelium
16
adipose tissue
16
connective tissue
4
embryo
4
spleen
Project
159
AMP
Genome assembly (visualization)
159
GRCh38
156
hg19
Lab
159
AMP-T2D consortium
Audit category:
7
missing controlled_by
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
cell line
GM12878
43
HepG2
39
tissue
body of pancreas
8
4
white adipose tissue
7
omental fat pad
3
1
spleen
3
1
right lobe of liver
2
1
+ See 3 more…
primary cell
mesenchymal cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 3 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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