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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 107ChIP-seq
  • 26single cell RNA-seq
  • 15total RNA-seq
  • 8ATAC-seq
  • 3WGBS
Assay category
  • 107DNA binding
  • 41Transcription
  • 8DNA accessibility
  • 3DNA methylation
Target of assay
  • 104transcription factor
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 35November, 2017
  • 28December, 2018
  • 17April, 2018
  • 15February, 2018
  • 15November, 2018
  • 13October, 2018
  • 11August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6October, 2017
  • 2December, 2017
  • 1June, 2018
Available data
  • 233fastq
  • 209bam
  • 159bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 159Homo sapiens
Biosample type
  • 82cell line
  • 36tissue
  • 26primary cell
  • 15in vitro differentiated cells
Organ
  • 43blood
  • 43bodily fluid
  • 42liver
  • 31pancreas
  • 18epithelium
  • 16adipose tissue
  • 16connective tissue
  • 4embryo
  • 4spleen
Project
  • 159AMP
Genome assembly (visualization)
  • 159GRCh38
  • 156hg19
Lab
  • 159AMP-T2D consortium
Audit category:
  • 7missing controlled_by
BIOSAMPLE
ASSAY

159 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
cell line
GM1287843
HepG239
tissue
body of pancreas84
white adipose tissue7
omental fat pad31
spleen31
right lobe of liver21
primary cell
mesenchymal cell4
pancreatic alpha cell4
pancreatic beta cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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