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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 90ChIP-seq
  • 9ATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
Assay category
  • 90DNA binding
  • 10DNA accessibility
  • 5Transcription
Target of assay
  • 74transcription factor
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
  • 1control
Date released
  • 38December, 2017
  • 31November, 2017
  • 18August, 2017
  • 7January, 2019
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1October, 2017
Available data
  • 166fastq
  • 144bam
  • 110bigWig
  • 92bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 11bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 110Homo sapiens
Biosample type
  • 45tissue
  • 38cell line
  • 16in vitro differentiated cells
  • 8primary cell
  • 3stem cell
Organ
  • 72liver
  • 14pancreas
  • 8epithelium
  • 5connective tissue
  • 4embryo
  • 2adipose tissue
  • 2blood
  • 2bodily fluid
  • 1brain
Project
  • 110AMP
Genome assembly (visualization)
  • 104hg19
  • 99GRCh38
  • 5hg18
Lab
  • 110AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 19inconsistent control read length
BIOSAMPLE
ASSAY

110 results

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Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
tissue
liver36
pancreas41
white adipose tissue2
cerebellum (Hemisphere)1
islet of Langerhans1
cell line
HepG2315
GM128782
in vitro differentiated cells
pancreatic endoderm31
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
primary cell
pancreatic alpha cell3
pancreatic beta cell3
pancreatic acinar cell2
stem cell
hESC21
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