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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
10
ATAC-seq
Assay category
170
DNA binding
10
DNA accessibility
Target of assay
104
transcription factor
69
recombinant protein
66
histone
66
histone modification
37
broad histone mark
29
narrow histone mark
12
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
69
November, 2017
31
August, 2017
21
November, 2018
19
December, 2017
17
October, 2018
11
January, 2019
7
August, 2020
3
September, 2020
2
December, 2018
Available data
203
fastq
193
bam
180
bigWig
170
bed narrowPeak
140
bigBed narrowPeak
1
zippedFastqFolder
Organism
180
Homo sapiens
Biosample type
94
cell line
44
in vitro differentiated cells
31
tissue
11
primary cell
Organ
104
liver
30
connective tissue
27
pancreas
24
epithelium
9
blood
9
bodily fluid
9
spleen
Project
170
AMP
10
HPAP
Genome assembly (visualization)
180
GRCh38
167
hg19
Lab
170
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
ATAC-seq
cell line
HepG2
85
GM12878
9
in vitro differentiated cells
adipocyte
30
hepatocyte
14
tissue
body of pancreas
17
spleen
9
right lobe of liver
5
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
skeletal muscle myoblast
1
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