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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 170ChIP-seq
  • 10ATAC-seq
Assay category
  • 170DNA binding
  • 10DNA accessibility
Target of assay
  • 104transcription factor
  • 69recombinant protein
  • 66histone
  • 66histone modification
  • 37broad histone mark
  • 29narrow histone mark
  • 12RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 69November, 2017
  • 31August, 2017
  • 21November, 2018
  • 19December, 2017
  • 17October, 2018
  • 11January, 2019
  • 7August, 2020
  • 3September, 2020
  • 2December, 2018
Available data
  • 203fastq
  • 193bam
  • 180bigWig
  • 170bed narrowPeak
  • 140bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 180Homo sapiens
Biosample type
  • 94cell line
  • 44in vitro differentiated cells
  • 31tissue
  • 11primary cell
Organ
  • 104liver
  • 30connective tissue
  • 27pancreas
  • 24epithelium
  • 9blood
  • 9bodily fluid
  • 9spleen
Project
  • 170AMP
  • 10HPAP
Genome assembly (visualization)
  • 180GRCh38
  • 167hg19
Lab
  • 170AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

180 results

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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG285
GM128789
in vitro differentiated cells
adipocyte30
hepatocyte14
tissue
body of pancreas17
spleen9
right lobe of liver5
primary cell
pancreatic alpha cell7
pancreatic beta cell3
skeletal muscle myoblast1
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