Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1268ChIP-seq
  • 1154total RNA-seq
  • 199DNase-seq
  • 95ATAC-seq
  • 90single cell RNA-seq
  • 18small RNA-seq
  • 12WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1268DNA binding
  • 1262Transcription
  • 299DNA accessibility
  • 12DNA methylation
  • 53D chromatin structure
Target of assay
  • 859histone
  • 859histone modification
  • 434narrow histone mark
  • 424broad histone mark
  • 387transcription factor
  • 88recombinant protein
  • 85RNA binding protein
  • 25chromatin remodeller
  • 23control
  • 2other context
  • 2other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 294November, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 166August, 2017
  • 155July, 2018
  • 97May, 2019
  • 85July, 2019
  • 70December, 2017
  • 65April, 2019
  • 47August, 2021
  • 46November, 2018
  • 42April, 2018
  • 40May, 2024
  • 32October, 2018
  • 32September, 2018
  • 31February, 2018
  • 31November, 2019
  • 20March, 2020
  • 20May, 2022
  • 13January, 2019
  • 8January, 2018
  • 7October, 2017
  • 5December, 2019
  • 5November, 2020
  • 3February, 2023
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 3019bam
  • 2851bigWig
  • 1637bed narrowPeak
  • 1454tsv
  • 903fastq
  • 895bigBed narrowPeak
  • 398tagAlign
  • 310bed broadPeak
  • 275bigBed broadPeak
  • 265bed bed3+
  • 155txt
  • 64xls
  • 31bed bedMethyl
  • 31bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 18zippedFastqFolder
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2845Homo sapiens
Biosample type
  • 1630tissue
  • 535primary cell
  • 425cell line
  • 258in vitro differentiated cells
  • 3stem cell
Organ
  • 561connective tissue
  • 553liver
  • 444pancreas
  • 417adipose tissue
  • 230epithelium
  • 224heart
  • 221brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 29embryo
  • 18ureter
  • 15vein
  • 12blood
  • 12bodily fluid
  • 6eye
  • 6spleen
  • 1pericardium
  • 1pituitary gland
Project
  • 2665AMP
  • 186T1D
Genome assembly (visualization)
  • 2713hg19
  • 2615GRCh38
  • 5hg18
Lab
  • 2552AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 3inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

2851 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue138122
liver73147201
islet of Langerhans291691261
bone tissue58
left cardiac atrium401
primary cell
monocyte84532
CD8-positive, alpha-beta T cell3342
pancreatic endocrine cell23
pancreatic ductal cell138
pancreatic acinar cell810
cell line
HepG2278
smooth muscle cell of the coronary artery452
EndoC_BH113332
GM12878111
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte4743
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego