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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1263total RNA-seq
  • 811ChIP-seq
  • 206DNase-seq
  • 135ATAC-seq
  • 23single cell RNA-seq
  • 18small RNA-seq
  • 13WGBS
  • 5Hi-C
  • 3FAIRE-seq
Assay category
  • 1304Transcription
  • 811DNA binding
  • 344DNA accessibility
  • 13DNA methylation
  • 53D chromatin structure
Target of assay
  • 649histone modification
  • 648histone
  • 335narrow histone mark
  • 313broad histone mark
  • 156transcription factor
  • 40RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 6control
  • 3other context
  • 3other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 125August, 2017
  • 122July, 2018
  • 97May, 2019
  • 96November, 2017
  • 85July, 2019
  • 65April, 2019
  • 47August, 2021
  • 40May, 2024
  • 40September, 2018
  • 34November, 2018
  • 31November, 2019
  • 29October, 2018
  • 28December, 2018
  • 20March, 2020
  • 20May, 2022
  • 13January, 2019
  • 12April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3February, 2023
  • 3January, 2018
  • 3September, 2020
  • 2December, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2477Homo sapiens
Biosample type
  • 1635tissue
  • 453primary cell
  • 246cell line
  • 143in vitro differentiated cells
Organ
  • 505connective tissue
  • 444pancreas
  • 410adipose tissue
  • 297liver
  • 224heart
  • 205brain
  • 188epithelium
  • 149vasculature
  • 147blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 44blood
  • 44bodily fluid
  • 31nerve
  • 18ureter
  • 15vein
  • 10embryo
  • 10spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2281AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2338hg19
  • 2300GRCh38
Lab
  • 2167AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 183inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

2477 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
FAIRE-seq
tissue
adipose tissue3812
islet of Langerhans26083
liver147412201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell10132
pancreatic beta cell10102
endothelial cell of umbilical vein1221
cell line
HepG25611
smooth muscle cell of the coronary artery524
EndoC_BH133132
GM12878431
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
adipocyte413
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