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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
122
ChIP-seq
41
ATAC-seq
16
single cell RNA-seq
10
DNase-seq
5
WGBS
Assay category
140
Transcription
122
DNA binding
51
DNA accessibility
5
DNA methylation
Target of assay
109
transcription factor
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
106
August, 2017
40
November, 2017
40
September, 2018
34
November, 2018
28
December, 2018
15
October, 2018
13
January, 2019
9
July, 2018
7
April, 2018
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
2
December, 2017
1
August, 2018
1
June, 2018
Available data
455
fastq
373
bam
318
bigWig
180
bed narrowPeak
147
bigBed narrowPeak
146
tsv
135
zippedFastqFolder
12
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
318
Homo sapiens
Biosample type
142
tissue
97
cell line
78
primary cell
1
in vitro differentiated cells
Organ
179
pancreas
71
epithelium
69
liver
43
blood
43
bodily fluid
10
spleen
9
connective tissue
8
adipose tissue
1
brain
Project
308
AMP
10
HPAP
Genome assembly (visualization)
315
GRCh38
303
hg19
Lab
307
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
318 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
tissue
islet of Langerhans
91
1
body of pancreas
8
4
2
2
liver
9
2
spleen
6
1
1
2
omental fat pad
3
1
1
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cell line
HepG2
5
48
1
GM12878
43
primary cell
pancreatic alpha cell
10
13
3
pancreatic beta cell
10
10
2
pancreatic acinar cell
4
5
2
pancreatic ductal cell
4
4
2
pancreatic cell
3
+ See 3 more…
in vitro differentiated cells
adipocyte
1
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