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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124total RNA-seq
  • 122ChIP-seq
  • 41ATAC-seq
  • 16single cell RNA-seq
  • 10DNase-seq
  • 5WGBS
Assay category
  • 140Transcription
  • 122DNA binding
  • 51DNA accessibility
  • 5DNA methylation
Target of assay
  • 109transcription factor
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 106August, 2017
  • 40November, 2017
  • 40September, 2018
  • 34November, 2018
  • 28December, 2018
  • 15October, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 3September, 2020
  • 2December, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 318Homo sapiens
Biosample type
  • 142tissue
  • 97cell line
  • 78primary cell
  • 1in vitro differentiated cells
Organ
  • 179pancreas
  • 71epithelium
  • 69liver
  • 43blood
  • 43bodily fluid
  • 10spleen
  • 9connective tissue
  • 8adipose tissue
  • 1brain
Project
  • 308AMP
  • 10HPAP
Genome assembly (visualization)
  • 315GRCh38
  • 303hg19
Lab
  • 307AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

318 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
tissue
islet of Langerhans911
body of pancreas8422
liver92
spleen6112
omental fat pad311
cell line
HepG25481
GM1287843
primary cell
pancreatic alpha cell10133
pancreatic beta cell10102
pancreatic acinar cell452
pancreatic ductal cell442
pancreatic cell3
in vitro differentiated cells
adipocyte1
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