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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 579ChIP-seq
  • 83single cell RNA-seq
  • 15total RNA-seq
  • 5GRO-seq
  • 4WGBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 579DNA binding
  • 98Transcription
  • 6DNA accessibility
  • 4DNA methylation
Target of assay
  • 340transcription factor
  • 220histone
  • 220histone modification
  • 114broad histone mark
  • 105narrow histone mark
  • 81recombinant protein
  • 66RNA binding protein
  • 25chromatin remodeller
  • 17control
  • 2other context
  • 2other post-translational modification
Date released
  • 238November, 2017
  • 147August, 2017
  • 70December, 2017
  • 46November, 2018
  • 42July, 2018
  • 37April, 2018
  • 32September, 2018
  • 31February, 2018
  • 18October, 2018
  • 13January, 2019
  • 7October, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 686Homo sapiens
Biosample type
  • 276cell line
  • 160primary cell
  • 137tissue
  • 116in vitro differentiated cells
  • 3stem cell
Organ
  • 325liver
  • 179pancreas
  • 113epithelium
  • 65connective tissue
  • 19embryo
  • 17brain
  • 15adipose tissue
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 6vasculature
  • 3blood vessel
Project
  • 692AMP
Genome assembly (visualization)
  • 678hg19
  • 630GRCh38
  • 5hg18
Lab
  • 692AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 80missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

692 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
GRO-seq
WGBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2265
GM1287811
primary cell
pancreatic endocrine cell23
pancreatic ductal cell137
pancreatic alpha cell710
pancreatic beta cell710
skeletal muscle myoblast151
tissue
liver41
islet of Langerhans21611
body of pancreas17
pancreas1321
white adipose tissue12
in vitro differentiated cells
adipocyte47
pancreatic endoderm1241
hepatocyte14
definitive endodermal cell621
primitive gut cell621
stem cell
hESC21
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