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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1273ChIP-seq
  • 1180total RNA-seq
  • 209DNase-seq
  • 131ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1304Transcription
  • 1273DNA binding
  • 345DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 755histone modification
  • 754histone
  • 496transcription factor
  • 390narrow histone mark
  • 363broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 20control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 334November, 2017
  • 272August, 2017
  • 215May, 2020
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 128May, 2021
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3188bam
  • 2949bigWig
  • 1685bed narrowPeak
  • 1504tsv
  • 1334fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 155txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2943Homo sapiens
Biosample type
  • 1772tissue
  • 522cell line
  • 398primary cell
  • 254in vitro differentiated cells
  • 3stem cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2933AMP
  • 10HPAP
  • 6T1D
Genome assembly (visualization)
  • 2796hg19
  • 2750GRCh38
  • 5hg18
Lab
  • 2859AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 188inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

2949 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue138122
islet of Langerhans292601361
liver821472201
bone tissue58
left cardiac atrium401
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH113332
H1-hESC8
primary cell
pancreatic alpha cell7101312
pancreatic beta cell7101012
pancreatic ductal cell134410
pancreatic acinar cell84512
pancreatic endocrine cell23
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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