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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
51
ChIP-seq
10
DNase-seq
3
ATAC-seq
Assay category
58
Transcription
51
DNA binding
13
DNA accessibility
Target of assay
45
histone
45
histone modification
30
broad histone mark
15
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
56
February, 2021
52
October, 2019
8
June, 2019
3
July, 2019
3
May, 2019
Available data
151
bam
134
bed narrowPeak
122
bigWig
68
tsv
57
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
122
Homo sapiens
Biosample type
61
tissue
56
cell line
5
primary cell
Organ
622
liver
622
pancreas
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
122
AMP
Genome assembly (visualization)
122
GRCh38
122
hg19
Lab
122
AMP-T2D consortium
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
122 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
tissue
tibial nerve
4
24
2
1
tibial artery
18
2
1
coronary artery
3
2
1
retina
3
cell line
smooth muscle cell of the coronary artery
52
4
primary cell
retinal pigment epithelial cell
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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