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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
total RNA-seq
150
ChIP-seq
5
DNase-seq
3
small RNA-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
220
Transcription
150
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
85
transcription factor
65
histone modification
64
histone
43
narrow histone mark
23
RNA binding protein
21
broad histone mark
15
recombinant protein
8
chromatin remodeller
Date released
November, 2017
170
May, 2020
58
February, 2021
52
November, 2018
50
December, 2017
18
August, 2017
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
433
bam
378
bigWig
223
tsv
166
bed narrowPeak
150
fastq
109
bigBed narrowPeak
88
txt
74
tagAlign
13
bed bed3+
5
bed bed3
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
378
Homo sapiens
Biosample type
303
tissue
50
cell line
14
in vitro differentiated cells
11
primary cell
Organ
612
pancreas
568
connective tissue
425
adipose tissue
320
liver
285
epithelium
184
heart
156
brain
149
vasculature
147
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
378
AMP
Genome assembly (visualization)
375
hg19
369
GRCh38
Lab
378
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
Hi-C
WGBS
tissue
liver
147
82
2
1
bone tissue
58
right lobe of liver
2
7
1
2
1
cell line
HepG2
5
44
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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