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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
14
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
44
tissue
11
primary cell
Organ
604
liver
505
connective tissue
464
pancreas
408
adipose tissue
284
epithelium
224
heart
222
brain
155
vasculature
blood vessel
131
kidney
91
limb
85
artery
58
bone element
55
musculature of body
31
nerve
29
embryo
28
blood
28
bodily fluid
18
ureter
15
vein
13
spleen
6
eye
1
pericardium
1
pituitary gland
Project
55
AMP
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
August, 2017
December, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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