Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
31
DNase-seq
5
total RNA-seq
4
small RNA-seq
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
Assay category
167
DNA binding
34
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
165
histone
165
histone modification
105
narrow histone mark
60
broad histone mark
control
2
RNA binding protein
2
transcription factor
Date released
76
October, 2019
61
November, 2017
29
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
212
bigWig
210
bam
200
bed narrowPeak
124
bigBed narrowPeak
99
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
23
tsv
14
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
202
tissue
10
primary cell
Organ
591
liver
505
connective tissue
464
pancreas
408
adipose tissue
282
epithelium
224
heart
216
brain
153
vasculature
blood vessel
131
kidney
91
limb
85
artery
58
bone element
55
blood
55
bodily fluid
55
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
212
AMP
Genome assembly (visualization)
208
GRCh38
149
hg19
Lab
212
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
August, 2017
organ_slims!
blood vessel
target.investigated_as!
control
BIOSAMPLE
ASSAY
212 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download