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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
28
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
28
DNA binding
6
Transcription
1
DNA methylation
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
1
October, 2019
Available data
69
bigWig
61
bed narrowPeak
58
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
16
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
69
Homo sapiens
Biosample type
58
tissue
11
primary cell
Organ
622
liver
615
pancreas
569
connective tissue
424
adipose tissue
298
epithelium
224
heart
215
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
69
AMP
Genome assembly (visualization)
68
hg19
54
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
August, 2018
October, 2017
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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