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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
66
total RNA-seq
27
DNase-seq
6
WGBS
4
ATAC-seq
1
small RNA-seq
Assay category
111
DNA binding
67
Transcription
31
DNA accessibility
6
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
transcription factor
10
RNA binding protein
Date released
56
February, 2021
47
April, 2019
40
May, 2024
27
June, 2019
19
July, 2019
15
May, 2019
7
October, 2019
2
March, 2020
2
May, 2021
Available data
215
bigWig
200
bam
185
bed narrowPeak
88
bigBed narrowPeak
73
tsv
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
215
Homo sapiens
Biosample type
157
tissue
56
cell line
2
primary cell
Organ
623
pancreas
605
liver
connective tissue
425
adipose tissue
298
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
21
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
214
GRCh38
167
hg19
Lab
175
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
August, 2021
organ_slims!
connective tissue
kidney
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
small RNA-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
3
3
2
2
heart
12
4
18
1
1
heart right ventricle
11
1
1
2
right atrium auricular region
7
2
2
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
52
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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