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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
112
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
73
October, 2019
30
June, 2019
29
November, 2017
16
July, 2019
10
May, 2019
2
November, 2018
2
October, 2017
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
142
tissue
20
primary cell
Organ
592
liver
554
connective tissue
550
pancreas
425
adipose tissue
259
epithelium
167
heart
162
brain
116
kidney
112
vasculature
107
blood vessel
71
artery
58
bone element
57
limb
55
blood
55
bodily fluid
52
musculature of body
18
embryo
18
ureter
15
nerve
12
spleen
8
vein
6
eye
1
pericardium
1
pituitary gland
0
spinal cord
Project
162
AMP
Genome assembly (visualization)
154
GRCh38
134
hg19
Lab
162
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
February, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
3
14
1
angular gyrus
7
layer of hippocampus
7
temporal lobe
5
1
1
caudate nucleus
4
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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