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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
7
ChIP-seq
6
total RNA-seq
3
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
WGBS
Assay category
15
DNA accessibility
7
DNA binding
6
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
68
histone modification
43
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
Date released
February, 2021
9
July, 2019
7
June, 2019
6
October, 2019
4
November, 2017
3
May, 2019
1
March, 2020
Available data
55
bed narrowPeak
48
bam
30
bigWig
17
bigBed narrowPeak
16
tsv
13
bed broadPeak
13
bigBed broadPeak
12
bed bed3+
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
hdf5
1
tar
Organism
30
Homo sapiens
Biosample type
16
tissue
14
primary cell
Organ
liver
455
pancreas
185
epithelium
101
kidney
85
connective tissue
71
heart
56
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
37
adipose tissue
31
vasculature
27
blood vessel
18
embryo
18
ureter
10
spleen
9
artery
7
nerve
5
eye
3
vein
1
pericardium
Project
30
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
organ_slims!
liver
target.investigated_as!
histone
BIOSAMPLE
ASSAY
30 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
WGBS
tissue
coronary artery
2
1
1
thoracic aorta
1
2
1
ascending aorta
1
1
1
tibial artery
2
1
aorta
1
1
primary cell
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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