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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1385ChIP-seq
  • 733total RNA-seq
  • 209DNase-seq
  • 135ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1385DNA binding
  • 857Transcription
  • 349DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 869histone modification
  • 868histone
  • 491transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • February, 2021
  • 334November, 2017
  • 303May, 2021
  • 272August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 2820bam
  • 2618bigWig
  • 1794bed narrowPeak
  • 1313fastq
  • 1042bigBed narrowPeak
  • 1041tsv
  • 390tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 153zippedFastqFolder
  • 72txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 10bed bed3
  • 5hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2612Homo sapiens
Biosample type
  • 1328tissue
  • 611primary cell
  • 439cell line
  • 237in vitro differentiated cells
  • 3stem cell
Organ
  • 622liver
  • 597pancreas
  • 275epithelium
  • 222brain
  • 168heart
  • 131kidney
  • 120connective tissue
  • 99vasculature
  • 94blood vessel
  • 91limb
  • 68musculature of body
  • 55blood
  • 55bodily fluid
  • 39adipose tissue
  • 31nerve
  • 29artery
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2422AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2465hg19
  • 2379GRCh38
  • 5hg18
Lab
  • 2308AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 148inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

2618 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
islet of Langerhans292601361
liver821472201
left cardiac atrium401
body of pancreas2624422
heart left ventricle293322
primary cell
monocyte84532
pancreatic alpha cell7101312
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7101012
pancreatic ductal cell134410
cell line
HepG232651
GM12878541
EndoC_BH11372
H1-hESC8
Panc1611
in vitro differentiated cells
cardiomyocytes359
adipocyte4713
neural progenitor cell137
pancreatic endoderm1241
hepatocyte14
stem cell
hESC21
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