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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
3
single cell RNA-seq
Assay category
24
DNA binding
3
Transcription
Target of assay
802
histone modification
801
histone
488
transcription factor
416
narrow histone mark
384
broad histone mark
102
RNA binding protein
88
recombinant protein
36
chromatin remodeller
22
control
5
other context
5
other post-translational modification
Date released
17
November, 2017
3
July, 2019
3
May, 2021
3
November, 2018
1
August, 2017
Available data
290
bam
172
fastq
66
tagAlign
27
bigWig
9
bed bed3+
5
bed narrowPeak
5
bigBed narrowPeak
3
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
15
cell line
9
primary cell
3
tissue
Organ
15
liver
6
brain
3
spleen
2
epithelium
2
vasculature
blood vessel
Project
27
AMP
Genome assembly (visualization)
27
hg19
8
GRCh38
Lab
24
AMP-T2D consortium
3
Kyle Gaulton, UCSD
month_released!
February, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
15
primary cell
CD8-positive, alpha-beta T cell
3
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
choroid plexus epithelial cell
1
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tissue
spleen
3
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