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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
541
total RNA-seq
451
ChIP-seq
25
ATAC-seq
7
DNase-seq
3
WGBS
Assay category
541
Transcription
451
DNA binding
32
DNA accessibility
3
DNA methylation
Target of assay
350
transcription factor
85
histone modification
84
histone
81
recombinant protein
61
RNA binding protein
54
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
386
February, 2021
268
November, 2017
170
May, 2020
53
November, 2018
50
December, 2017
35
August, 2017
July, 2019
20
May, 2022
17
August, 2021
7
October, 2019
5
December, 2019
5
January, 2019
5
October, 2018
3
June, 2019
1
January, 2018
1
March, 2020
1
October, 2017
Available data
1104
bam
1027
bigWig
557
tsv
509
fastq
454
bed narrowPeak
368
bigBed narrowPeak
94
tagAlign
66
bed broadPeak
65
bigBed broadPeak
18
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
tar
2
hic
1
bed bed3
1
csv
1
vcf
Organism
1027
Homo sapiens
Biosample type
671
tissue
332
cell line
14
in vitro differentiated cells
10
primary cell
Organ
619
pancreas
614
liver
553
connective tissue
413
adipose tissue
294
epithelium
206
brain
203
heart
145
vasculature
140
blood vessel
124
kidney
90
limb
82
artery
63
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pituitary gland
0
ovary
Project
1027
AMP
Genome assembly (visualization)
1020
hg19
931
GRCh38
Lab
993
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
24
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
July, 2019
BIOSAMPLE
ASSAY
1027 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
liver
145
82
20
2
white adipose tissue
12
right lobe of liver
7
1
1
omental fat pad
3
1
2
+ See 3 more…
cell line
HepG2
5
326
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
3
1
hepatic stellate cell
1
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