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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
3
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
3
DNA binding
Target of assay
histone
11
histone modification
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
4
February, 2018
3
December, 2017
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
Organism
18
Homo sapiens
Biosample type
10
in vitro differentiated cells
8
cell line
Organ
540
liver
535
connective tissue
480
pancreas
423
adipose tissue
210
epithelium
127
heart
101
kidney
87
vasculature
83
blood vessel
65
artery
58
bone element
56
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
18
embryo
18
ureter
10
spleen
7
nerve
5
eye
3
vein
pericardium
Project
18
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
1
hg18
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
June, 2018
organ_slims!
pericardium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
3
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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