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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 1056ChIP-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 1056DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 794histone modification
  • 793histone
  • 410narrow histone mark
  • 382broad histone mark
  • 256transcription factor
  • 71RNA binding protein
  • 22recombinant protein
  • 21chromatin remodeller
  • 7control
  • 3other context
  • 3other post-translational modification
Date released
  • 551February, 2021
  • November, 2017
  • 303May, 2021
  • 272August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3000bam
  • 2835bigWig
  • 1601tsv
  • 1504bed narrowPeak
  • 1034fastq
  • 730bigBed narrowPeak
  • 320tagAlign
  • 274bed bed3+
  • 252bed broadPeak
  • 221bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
  • 1vcf
Organism
  • 2829Homo sapiens
Biosample type
  • 1715tissue
  • 604primary cell
  • 259in vitro differentiated cells
  • 254cell line
  • 3stem cell
Organ
  • 623pancreas
  • 570connective tissue
  • 425adipose tissue
  • 354liver
  • 295epithelium
  • 224heart
  • 156brain
  • 149vasculature
  • 147blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2639AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2735hg19
  • 2651GRCh38
  • 5hg18
Lab
  • 2525AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 5inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

2835 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260291361
liver147822201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes593
adipocyte44713
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
cell line
HepG25581
smooth muscle cell of the coronary artery524
GM12878541
EndoC_BH133132
H1-hESC8
stem cell
hESC21
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