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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1262total RNA-seq
  • 1214ChIP-seq
  • 201DNase-seq
  • 131ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5GRO-seq
  • 4FAIRE-seq
  • 4Hi-C
Assay category
  • 1386Transcription
  • 1214DNA binding
  • 336DNA accessibility
  • 17DNA methylation
  • 43D chromatin structure
Target of assay
  • 700histone modification
  • 699histone
  • 489transcription factor
  • 375broad histone mark
  • 323narrow histone mark
  • 106RNA binding protein
  • 81recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 551February, 2021
  • 334November, 2017
  • 303May, 2021
  • 272August, 2017
  • 260May, 2020
  • 210June, 2019
  • October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3142bam
  • 2962bigWig
  • 1628bed narrowPeak
  • 1584tsv
  • 1358fastq
  • 972bigBed narrowPeak
  • 349tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 265bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2956Homo sapiens
Biosample type
  • 1612tissue
  • 590primary cell
  • 502cell line
  • 255in vitro differentiated cells
  • 3stem cell
Organ
  • 616liver
  • 615pancreas
  • 567connective tissue
  • 424adipose tissue
  • 276epithelium
  • 217heart
  • 146brain
  • 119vasculature
  • 114blood vessel
  • 109kidney
  • 68musculature of body
  • 64artery
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 39limb
  • 29embryo
  • 18ureter
  • 16spleen
  • 6eye
  • 1pericardium
Project
  • 2766AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2809hg19
  • 2729GRCh38
  • 5hg18
Lab
  • 2652AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 178inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

2962 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
GRO-seq
FAIRE-seq
Hi-C
tissue
adipose tissue381112
islet of Langerhans260291361
liver146772201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
cell line
HepG253261
smooth muscle cell of the coronary artery524
GM12878541
EndoC_BH133132
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte44711
neural progenitor cell713
cardiac precursors (cardiac muscle cell)18
pancreatic endoderm4121
stem cell
hESC21
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