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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
89
total RNA-seq
4
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
110
DNA binding
89
Transcription
8
DNA accessibility
Target of assay
96
histone modification
95
histone
49
broad histone mark
46
narrow histone mark
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
1
control
Date released
334
November, 2017
302
May, 2021
260
May, 2020
207
August, 2017
204
October, 2019
195
June, 2019
162
July, 2018
101
February, 2021
97
May, 2019
79
November, 2018
72
December, 2017
72
September, 2018
68
July, 2019
65
April, 2019
47
April, 2018
45
August, 2021
42
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
March, 2020
20
May, 2022
13
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
201
Homo sapiens
Biosample type
161
tissue
46
primary cell
Organ
159
pancreas
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
207
AMP
Genome assembly (visualization)
207
hg19
183
GRCh38
Lab
207
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2020
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
right lobe of liver
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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