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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
total RNA-seq
171
ChIP-seq
48
single cell RNA-seq
5
ATAC-seq
5
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
257
Transcription
171
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
452
bam
441
bigWig
337
fastq
257
tsv
144
bed narrowPeak
85
tagAlign
43
bigBed narrowPeak
42
bed broadPeak
34
bed bed3+
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
435
Homo sapiens
Biosample type
294
tissue
99
primary cell
48
in vitro differentiated cells
Organ
312
pancreas
72
connective tissue
50
epithelium
18
liver
17
adipose tissue
13
musculature of body
Project
441
AMP
Genome assembly (visualization)
439
hg19
416
GRCh38
Lab
441
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
441 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
205
27
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
pancreatic beta cell
7
9
1
skeletal muscle myoblast
15
2
pancreatic alpha cell
7
7
1
pancreatic endocrine cell
12
pancreatic acinar cell
5
1
+ See 13 more…
in vitro differentiated cells
adipocyte
47
1
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