Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
89
total RNA-seq
4
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
157
DNA binding
89
Transcription
9
DNA accessibility
Target of assay
121
histone modification
120
histone
61
broad histone mark
58
narrow histone mark
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
334
November, 2017
303
May, 2021
260
May, 2020
255
August, 2017
206
October, 2019
191
June, 2019
165
February, 2021
164
July, 2018
97
May, 2019
79
November, 2018
73
July, 2019
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
42
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
13
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
0
September, 2023
Available data
269
fastq
265
bam
255
bigWig
139
bed narrowPeak
89
tsv
77
tagAlign
40
bed broadPeak
40
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
249
Homo sapiens
Biosample type
161
tissue
48
in vitro differentiated cells
46
primary cell
Organ
159
pancreas
65
connective tissue
18
liver
adipose tissue
17
epithelium
13
musculature of body
Project
255
AMP
Genome assembly (visualization)
255
hg19
231
GRCh38
Lab
255
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
adipose tissue
ureter
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
right lobe of liver
1
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
Download