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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 171ChIP-seq
  • 89total RNA-seq
  • 5ATAC-seq
  • 4DNase-seq
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 171DNA binding
  • 89Transcription
  • 10DNA accessibility
  • 2DNA methylation
Target of assay
  • 123histone modification
  • 122histone
  • 61broad histone mark
  • 60narrow histone mark
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
  • 1control
Date released
  • 551February, 2021
  • 334November, 2017
  • 303May, 2021
  • 272August, 2017
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 80November, 2018
  • 72December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 287fastq
  • 282bam
  • 272bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 266Homo sapiens
Biosample type
  • 178tissue
  • 48in vitro differentiated cells
  • 46primary cell
Organ
  • 159pancreas
  • 65connective tissue
  • 18liver
  • 17adipose tissue
  • 17epithelium
  • 13musculature of body
Project
  • 272AMP
Genome assembly (visualization)
  • 270hg19
  • 247GRCh38
Lab
  • 272AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

272 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans278911
liver17
skeletal muscle tissue13
pancreas12
white adipose tissue12
in vitro differentiated cells
adipocyte471
primary cell
skeletal muscle myoblast152
pancreatic endocrine cell12
pancreatic alpha cell71
pancreatic beta cell71
pancreatic acinar cell1
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