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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
48
single cell RNA-seq
30
ChIP-seq
2
ATAC-seq
Assay category
179
Transcription
30
DNA binding
2
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
11
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
287
tsv
213
bam
211
bigWig
106
bed narrowPeak
64
xls
57
txt
50
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
211
Homo sapiens
Biosample type
116
tissue
51
primary cell
22
cell line
22
in vitro differentiated cells
Organ
153
pancreas
36
epithelium
17
liver
8
embryo
4
connective tissue
Project
211
AMP
Genome assembly (visualization)
210
hg19
195
GRCh38
Lab
195
AMP-T2D consortium
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
month_released!
April, 2018
BIOSAMPLE
ASSAY
211 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
116
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
hepatocyte
3
+ See 11 more…
cell line
HepG2
14
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
7
13
adipocyte
1
osteoblast
1
See all biosamples
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