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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
15
total RNA-seq
10
ATAC-seq
Assay category
36
DNA binding
15
Transcription
10
DNA accessibility
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
551
February, 2021
334
November, 2017
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
123
tsv
118
bed narrowPeak
64
bam
64
xls
61
bigWig
57
txt
38
tagAlign
17
fastq
6
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
61
Homo sapiens
Biosample type
22
cell line
22
in vitro differentiated cells
14
tissue
3
primary cell
Organ
17
liver
8
embryo
7
brain
5
pancreas
3
connective tissue
3
epithelium
1
adipose tissue
1
spleen
Project
61
AMP
Genome assembly (visualization)
59
hg19
45
GRCh38
Lab
44
AMP-T2D consortium
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
missing controlled_by
month_released!
April, 2018
May, 2021
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
14
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
13
7
adipocyte
1
osteoblast
1
tissue
brain
6
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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primary cell
hepatocyte
3
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