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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
total RNA-seq
48
single cell RNA-seq
45
ATAC-seq
27
ChIP-seq
1
DNase-seq
Assay category
356
Transcription
46
DNA accessibility
27
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
453
bam
429
bigWig
357
tsv
50
fastq
50
tagAlign
29
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
429
Homo sapiens
Biosample type
286
tissue
143
primary cell
Organ
170
liver
153
pancreas
33
epithelium
7
connective tissue
Project
384
AMP
45
T1D
Genome assembly (visualization)
429
hg19
376
GRCh38
Lab
384
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
month_released!
April, 2019
BIOSAMPLE
ASSAY
429 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
liver
143
27
islet of Langerhans
116
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
pancreatic acinar cell
5
B cell
2
2
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