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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
total RNA-seq
83
ChIP-seq
45
ATAC-seq
Assay category
210
Transcription
83
DNA binding
45
DNA accessibility
Target of assay
67
histone
67
histone modification
42
narrow histone mark
25
broad histone mark
16
transcription factor
12
RNA binding protein
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
0
May, 2023
Available data
418
bam
338
bigWig
211
tsv
109
bed narrowPeak
60
fastq
50
tagAlign
45
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
338
Homo sapiens
Biosample type
234
tissue
92
primary cell
12
cell line
Organ
170
liver
73
pancreas
14
epithelium
5
adipose tissue
5
connective tissue
Project
293
AMP
45
T1D
Genome assembly (visualization)
338
hg19
285
GRCh38
Lab
293
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
338 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
tissue
liver
143
27
body of pancreas
25
islet of Langerhans
19
endocrine pancreas
14
omental fat pad
3
+ See 2 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
cell line
EndoC_BH1
1
11
See all biosamples
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