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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
366
ChIP-seq
34
ATAC-seq
26
total RNA-seq
Assay category
366
DNA binding
34
DNA accessibility
26
Transcription
Target of assay
240
transcription factor
107
histone
107
histone modification
66
recombinant protein
62
broad histone mark
45
narrow histone mark
35
RNA binding protein
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
September, 2020
Available data
488
bam
426
bigWig
421
fastq
397
bed narrowPeak
326
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
26
tsv
7
txt
3
tar
1
bed bed3+
1
csv
Organism
426
Homo sapiens
Biosample type
268
cell line
81
primary cell
77
tissue
Organ
288
liver
72
pancreas
67
epithelium
66
brain
6
vasculature
3
blood vessel
Project
426
AMP
Genome assembly (visualization)
373
hg19
351
GRCh38
Lab
406
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
September, 2020
BIOSAMPLE
ASSAY
426 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
268
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
4
10
pancreatic acinar cell
8
3
2
pancreatic alpha cell
3
10
pancreatic endocrine cell
11
+ See 3 more…
tissue
liver
20
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 2 more…
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