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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
328
ChIP-seq
4
total RNA-seq
1
DNase-seq
Assay category
328
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
238
transcription factor
73
histone
73
histone modification
66
recombinant protein
45
broad histone mark
33
RNA binding protein
28
narrow histone mark
15
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
495
February, 2021
328
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
203
June, 2019
171
October, 2019
164
July, 2018
80
November, 2018
75
July, 2019
72
December, 2017
72
September, 2018
65
April, 2019
58
May, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
May, 2022
19
March, 2020
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
392
bam
333
bigWig
318
fastq
311
bed narrowPeak
309
bigBed narrowPeak
78
tagAlign
67
bed broadPeak
61
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
333
Homo sapiens
Biosample type
268
cell line
57
tissue
8
primary cell
Organ
268
liver
66
brain
6
epithelium
vasculature
5
connective tissue
3
blood vessel
Project
333
AMP
Genome assembly (visualization)
280
GRCh38
280
hg19
Lab
333
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2022
organ_slims!
vasculature
BIOSAMPLE
ASSAY
333 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
cell line
HepG2
268
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 1 more…
primary cell
osteoblast
4
1
astrocyte of the cerebellum
3
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