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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1119total RNA-seq
  • 958ChIP-seq
  • 204DNase-seq
  • 115ATAC-seq
  • 106single cell RNA-seq
  • 16WGBS
  • 15small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Hi-C
Assay category
  • 1240Transcription
  • 958DNA binding
  • 324DNA accessibility
  • 16DNA methylation
  • 43D chromatin structure
Target of assay
  • 786histone
  • 786histone modification
  • 397broad histone mark
  • 388narrow histone mark
  • 163transcription factor
  • 50RNA binding protein
  • 13chromatin remodeller
  • 10control
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 254August, 2017
  • 208June, 2019
  • 201October, 2019
  • 164July, 2018
  • 97May, 2019
  • 90May, 2020
  • 77July, 2019
  • 72September, 2018
  • 66November, 2017
  • 65April, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30August, 2021
  • 30December, 2018
  • 28November, 2018
  • 22December, 2017
  • 21January, 2019
  • 19March, 2020
  • 14October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 2711bam
  • 2547bigWig
  • 1426tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 260bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2541Homo sapiens
Biosample type
  • 1507tissue
  • 602primary cell
  • 245in vitro differentiated cells
  • 190cell line
  • 3stem cell
Organ
  • 623pancreas
  • liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2351AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2402GRCh38
  • 2399hg19
  • 5hg18
Lab
  • 2271AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 192inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2547 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260291361
bone tissue58
left cardiac atrium401
body of pancreas2264422
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes593
adipocyte44713
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
cell line
smooth muscle cell of the coronary artery524
GM12878541
EndoC_BH133132
H1-hESC8
Panc1611
stem cell
hESC21
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