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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1229ChIP-seq
  • 954total RNA-seq
  • 201DNase-seq
  • 95ATAC-seq
  • 26single cell RNA-seq
  • 16small RNA-seq
  • 13WGBS
  • 5GRO-seq
  • 4Hi-C
  • 3FAIRE-seq
Assay category
  • 1229DNA binding
  • 996Transcription
  • 299DNA accessibility
  • 13DNA methylation
  • 43D chromatin structure
Target of assay
  • 727histone modification
  • 726histone
  • 477transcription factor
  • 371narrow histone mark
  • 354broad histone mark
  • 97RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 23control
  • 5other context
  • 5other post-translational modification
Date released
  • 525February, 2021
  • 334November, 2017
  • 260May, 2020
  • 260May, 2021
  • 206June, 2019
  • 199October, 2019
  • 113August, 2017
  • 96May, 2019
  • 81July, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 47August, 2021
  • 40May, 2024
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 20May, 2022
  • 11July, 2018
  • 10April, 2018
  • 10March, 2020
  • 9October, 2017
  • 8January, 2018
  • 5December, 2019
  • 5November, 2020
  • 5October, 2018
  • 3February, 2023
  • 2June, 2018
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2546Homo sapiens
Biosample type
  • 1399tissue
  • 466cell line
  • 421primary cell
  • 257in vitro differentiated cells
  • 3stem cell
Organ
  • pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2366AMP
  • 180T1D
Genome assembly (visualization)
  • 2409hg19
  • 2319GRCh38
  • 5hg18
Lab
  • 2247AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 139inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 32missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2546 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
GRO-seq
Hi-C
FAIRE-seq
tissue
adipose tissue138122
liver821472201
bone tissue58
left cardiac atrium401
heart left ventricle293322
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
H1-hESC8
RCC 7860 HIF1a re-expression31
primary cell
monocyte84532
CD8-positive, alpha-beta T cell3342
skeletal muscle myoblast1512
endothelial cell of umbilical vein1221
epithelial cell of proximal tubule811
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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