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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 395total RNA-seq
  • 19ChIP-seq
  • 4ATAC-seq
  • 3small RNA-seq
  • 2DNase-seq
  • 2WGBS
Assay category
  • 398Transcription
  • 19DNA binding
  • 6DNA accessibility
  • 2DNA methylation
Target of assay
  • 17transcription factor
  • 5RNA binding protein
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 386February, 2021
  • 17August, 2017
  • 12July, 2019
  • 5October, 2018
  • 1January, 2018
  • 1June, 2019
  • 1November, 2018
  • 1October, 2017
  • 1October, 2019
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 425Homo sapiens
Biosample type
  • 423tissue
  • 2primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 425AMP
Genome assembly (visualization)
  • 423hg19
  • 422GRCh38
Lab
  • 425AMP-T2D consortium
Audit category:
  • 12missing controlled_by
BIOSAMPLE
ASSAY

425 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue381122
white adipose tissue12
omental fat pad43112
subcutaneous adipose tissue6211
visceral abdominal adipose tissue3
primary cell
mesenchymal stem cell of adipose11
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