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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
8
total RNA-seq
7
DNase-seq
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
75
DNA binding
10
DNA accessibility
8
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
3
RNA binding protein
3
transcription factor
1
control
Date released
46
October, 2019
36
May, 2019
7
July, 2019
3
June, 2019
3
November, 2017
1
March, 2020
Available data
120
bam
96
bigWig
82
bed narrowPeak
80
bigBed narrowPeak
15
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
96
Homo sapiens
Biosample type
74
tissue
22
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
96
AMP
Genome assembly (visualization)
94
hg19
90
GRCh38
Lab
96
AMP-T2D consortium
organ_slims!
artery
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
24
4
2
1
ascending aorta
13
1
1
thoracic aorta
12
2
1
aorta
11
1
1
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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