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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ChIP-seq
  • 58total RNA-seq
  • 9DNase-seq
  • 3ATAC-seq
  • 2Hi-C
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 76DNA binding
  • 58Transcription
  • 13DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 67histone
  • 67histone modification
  • 43broad histone mark
  • 24narrow histone mark
  • 8transcription factor
  • 4RNA binding protein
  • 1control
Date released
  • 56February, 2021
  • 39May, 2019
  • 36October, 2019
  • 10July, 2019
  • 5June, 2019
  • 3November, 2017
  • 1March, 2020
Available data
  • 180bam
  • 150bigWig
  • 129bed narrowPeak
  • 79bigBed narrowPeak
  • 68tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 150Homo sapiens
Biosample type
  • 70tissue
  • 56cell line
  • 24primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 150AMP
Genome assembly (visualization)
  • 148hg19
  • 144GRCh38
Lab
  • 150AMP-T2D consortium
BIOSAMPLE
ASSAY

150 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial artery1821
ascending aorta1311
thoracic aorta1221
aorta1111
coronary artery321
cell line
smooth muscle cell of the coronary artery452
primary cell
endothelial cell of umbilical vein1221
brain microvascular endothelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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