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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
171
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
165
histone
165
histone modification
105
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
242
bam
221
bigWig
202
bed narrowPeak
127
bigBed narrowPeak
117
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
201
tissue
20
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
pituitary gland
Project
221
AMP
Genome assembly (visualization)
213
GRCh38
158
hg19
Lab
221
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
nerve
pituitary gland
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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