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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 172ChIP-seq
  • 32DNase-seq
  • 5total RNA-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 172DNA binding
  • 35DNA accessibility
  • 12Transcription
  • 33D chromatin structure
Target of assay
  • 166histone
  • 166histone modification
  • 106narrow histone mark
  • 60broad histone mark
  • 6control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 76October, 2019
  • 66November, 2017
  • 30June, 2019
  • 25May, 2019
  • 16July, 2019
  • 7October, 2017
  • 2November, 2018
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 222Homo sapiens
Biosample type
  • 202tissue
  • 20primary cell
Organ
  • 623pancreas
  • 622liver
  • 570connective tissue
  • 425adipose tissue
  • 301epithelium
  • 224heart
  • 222brain
  • 155vasculature
  • 150blood vessel
  • 131kidney
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 222AMP
Genome assembly (visualization)
  • 214GRCh38
  • 159hg19
Lab
  • 222AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
BIOSAMPLE
ASSAY

222 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain11141
layer of hippocampus17
temporal lobe1311
angular gyrus14
caudate nucleus121
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell31
brain pericyte11
cerebellar granule cell2
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